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Are Powerful Graph Neural Nets Necessary? A Dissection on Graph Classification

2019-05-11Code Available0· sign in to hype

Ting Chen, Song Bian, Yizhou Sun

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Abstract

Graph Neural Nets (GNNs) have received increasing attentions, partially due to their superior performance in many node and graph classification tasks. However, there is a lack of understanding on what they are learning and how sophisticated the learned graph functions are. In this work, we propose a dissection of GNNs on graph classification into two parts: 1) the graph filtering, where graph-based neighbor aggregations are performed, and 2) the set function, where a set of hidden node features are composed for prediction. To study the importance of both parts, we propose to linearize them separately. We first linearize the graph filtering function, resulting Graph Feature Network (GFN), which is a simple lightweight neural net defined on a set of graph augmented features. Further linearization of GFN's set function results in Graph Linear Network (GLN), which is a linear function. Empirically we perform evaluations on common graph classification benchmarks. To our surprise, we find that, despite the simplification, GFN could match or exceed the best accuracies produced by recently proposed GNNs (with a fraction of computation cost), while GLN underperforms significantly. Our results demonstrate the importance of non-linear set function, and suggest that linear graph filtering with non-linear set function is an efficient and powerful scheme for modeling existing graph classification benchmarks.

Tasks

Benchmark Results

DatasetModelMetricClaimedVerifiedStatus
COLLABGFNAccuracy81.5Unverified
COLLABGFN-lightAccuracy81.34Unverified
D&DGFN-lightAccuracy78.62Unverified
D&DGFNAccuracy78.78Unverified
ENZYMESGFNAccuracy70.17Unverified
ENZYMESGFN-lightAccuracy69.5Unverified
IMDb-BGFNAccuracy73Unverified
IMDb-BGFN-lightAccuracy73Unverified
IMDb-MGFNAccuracy51.8Unverified
IMDb-MGFN-lightAccuracy51.2Unverified
MUTAGGFN-lightAccuracy89.89Unverified
MUTAGGFNAccuracy90.84Unverified
NCI1GFNAccuracy83.65Unverified
NCI1GFN-lightAccuracy81.43Unverified
PROTEINSGFNAccuracy76.46Unverified
PROTEINSGFN-lightAccuracy77.44Unverified
RE-M12KGFN-lightAccuracy49.75Unverified
RE-M12KGFNAccuracy49.43Unverified
RE-M5KGFNAccuracy49.43Unverified
RE-M5KGFN-lightAccuracy49.75Unverified

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