SOTAVerified

Deep learning enables de novo peptide sequencing from data-independent-acquisition mass spectrometry

2018-12-20Nature Methods 2018Code Available0· sign in to hype

Ngoc Hieu Tran, Rui Qiao, Lei Xin, Xin Chen, Chuyi Liu, Xianglilan Zhang, Baozhen Shan, Ali Ghodsi, Ming Li

arXivPDF

Code Available — Be the first to reproduce this paper.

Reproduce

Code

Abstract

We present DeepNovo-DIA, a de novo peptide-sequencing method for data-independent acquisition (DIA) mass spectrometry data. We use neural networks to capture precursor and fragment ions across m/z, retention-time, and intensity dimensions. They are then further integrated with peptide sequence patterns to address the problem of highly multiplexed spectra. DIA coupled with de novo sequencing allowed us to identify novel peptides in human antibodies and antigens.

Tasks

de novo peptide sequencing

Reproductions